Control_2 Alignment Results
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Total Number of Reads: 	499792

Number of Reads with unique Alignments: 	299627 (60.0%)
Number of Reads above Ambiguity Tolerance: 	36238 (7.3%)
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Total Number of Reads matched: 			335865 (67.3%)


Number of Reads below Ambiguity Tolerance: 	15105 (3.0%)
Number of Reads with failed Alignment: 		148822 (29.8%)
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Total Number of Reads discarded: 		163927 (32.8%)



Parameter settings
L_bw (Seed Length): 11
N_bw (Seed Mismatch): 1
i_bw (Interval Function): S,1,0.75
Theta (Ambiguity Threshold): 2
AS_min (Matching Threshold): 40
